Bubnell, J.E., P. Fernandez-Begne, C.K. Ulbing, and C.F. Aquadro. 2021. Genetic variation among wMel strains of Wolbachia pipientis differentially rescues a bag of marbles partial loss of function mutant in Drosophila melanogaster. bioRxiv. 2021.01.15.426050; doi: https://doi.org/10.1101/2021.01.15.426050 In review at Genetics
Bauer Dumont, V.L., S.L. White, D. Zinshteyn, and C.F. Aquadro. 2021. Molecular population genetics of Sex-lethal (Sxl) in the D. melanogaster species group - a locus that genetically interacts with Wolbachia pipientis in Drosophila melanogaster. bioRxiv 2021.01.10.426102; doi: https://doi.org/10.1101/2021.01.10.426102 To appear in G3.
Raghavan, V., Aquadro, C.F., and Alani E. 2019. Baker's yeast clinical isolates provide a model for how pathogenic yeasts adapt to stress. Trends Genet. 35(11):804-816 (PMID 31526615)
Jensen J.D., Payseur B.A., Stephan W., Aquadro C.F., Lynch M., Charlesworth D., Charlesworth, B. 2018. The importance of the neutral theory in 1968 and 50 years on: A response to Kern and Hahn 2018. Evolution 73(1):111-114. (PMID 30460993)
Raghavan V., Bui D.T., Al-Sweel N., Friedrich A., Schacherer J., Aquadro C.F., and Alani E. 2018. Mismatch repair incompatibilities in diverse yeast populations. Genetics 210(4):1253-1266. (PMID 30348651)
Bui, D. T., Friedrich, A., Al-Sweel, N., Liti, G., Schacherer, J., Aquadro, C. F., & Alani, E. (2017). Mismatch repair incompatibilities in diverse yeast populations. Genetics. 205:1459 - 1471.
Pegueroles, C. A., Mari-Solano, M., Aquadro, C. F., Pascual, M., Mestres, F., & , (2016). Inversions and adaptation to the plant toxin ouabain shape DNA sequence variation within and between chromosomal inversions of Drosophila subobscura. Scientific Reports. 6:23754.
Choi, J. Y., & Aquadro, C. F. (2016). Recent and long term selection across synonymous sites in Drosophila ananassae. Journal of Molecular Evolution. Early-Online:1-11.
Bui, D. T., Dine, E., Anderson, J. B., Aquadro, C. F., & Alani, E. (2015). A genetic incompatibility accelerates adaptation in yeast. PLOS Genetics. 11:e1005407.
Choi, J. Y., & Aquadro, C. F. (2015). Molecular evolution of Drosophila germline stem cell and neural stem cell regulating genes. GBE: Genome Biology and Evolution. 7:3097-3114.
Choi, J. Y., Bubnell, J. E., & Aquadro, C. F. (2015). Population genomic analysis of the infectious and integrated Wolbachia pipientis genomes in Drosophila ananassae. GBE: Genome Biology and Evolution. 7:236-282.
Flores, H. A., Bubnell, J. E., Aquadro, C. F., & Barbash, D. A. (2015). The Drosophila bag of marbles gene interacts genetically with Wolbachia and shows female-specific effects of divergence. PLOS Genetics. 11:e1005453.
Flores, H. A., Bauer DuMont, V. L., Fatoo, A., Hubbard, D., Hijji, M., Barbash, D. A., & Aquadro, C. F. (2015). Adaptive evolution of genes involved in the regulation of germline stem cells in Drosophila melanogaster and D. simulans. G3: Genes, Genomes, Genetics. 5:583-592.
Zaborske, J. M., Bauer DuMont, V. L., Wallace, E. W., Pan, T., Aquadro, C. F., & Drummond, D. A. (2014). A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus. PLOS Biology. 12:e1002015 (13 pages).
Choi, J. Y., & Aquadro, C. F. (2014). The coevolutionary period of Wolbachia pipientis infecting Drosophila ananassae and its impact on the evolution of the host germline stem cell regulating genes. MBE: Molecular Biology and Evolution. 31:2457 - 2471.