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  • HOME
  • NEWS
  • RESEARCH
    • PUBLICATIONS
  • PEOPLE
    • PAST MEMBERS
    • COLLEAGUES & COLLABORATORS
  • OUTREACH & TEACHING
  • PHOTOS
  • JOINING THE LAB

Recent publications

Bubnell, J.E., Ulbing, C.K., Fernandez-Begne, P., and Aquadro, C.F. 2022. Functional divergence of the bag of marbles gene in the Drosophila melanogaster species group. Molecular Biology and Evolution, ms137,  https://doi.org/10.1093/molbev/msac137
Johri, P, Charles F. Aquadro, CF, Beaumont, M, Brian Charlesworth, B, Excoffier, L, Eyre-Walker, A, Keightley, PD, Lynch, M, McVean, G, A. Payseur, BA, Pfeifer, SP, Stephan, W, and Jensen, JD. 2022. ​Recommendations for improving statistical inference in population genetics. PLOS Biology 20(5):e3001669.  https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001669​ 
Bubnell, J.E., Fernandez-Begne, P., Ulbing, C.K., and Aquadro, C.F. 2021. Diverse wMel variants of Wolbachia pipientis differentially rescue fertility and cytological defects of the bag of marbles partial loss of function mutant in Drosophila melanogaster. G3 Genes|Genomes|Genetics, advance access publication 7 September 2021. DOI: 10.1093/g3journal/jkab312
Bauer Dumont, V.L., S.L. White, D. Zinshteyn, and C.F. Aquadro. 2021. Molecular population genetics of Sex-lethal (Sxl) in the D. melanogaster species group - a locus that genetically interacts with Wolbachia pipientis in Drosophila melanogaster.  ​G3 Genes|Genomes|Genetics 11(8), jkab197. DOI: 10.1093/g3journal/jkab197
Raghavan, V., Aquadro, C.F., and Alani E. 2019. Baker's yeast clinical isolates provide a model for how pathogenic yeasts adapt to stress.  Trends Genet. 35(11):804-816 (PMID 31526615)
Jensen J.D., Payseur B.A., Stephan W., Aquadro C.F., Lynch M., Charlesworth D., Charlesworth, B. 2018.  The importance of the neutral theory in 1968 and 50 years on: A response to Kern and Hahn 2018. Evolution 73(1):111-114. (PMID 30460993)
Raghavan V., Bui D.T., Al-Sweel N., Friedrich A., Schacherer J., Aquadro C.F., and Alani E. 2018. Mismatch repair incompatibilities in diverse yeast populations.  Genetics 210(4):1253-1266.  (PMID 30348651)
Bui, D. T., Friedrich, A., Al-Sweel, N., Liti, G., Schacherer, J., Aquadro, C. F., & Alani, E. (2017). Mismatch repair incompatibilities in diverse yeast populations. Genetics. 205:1459 - 1471.
Pegueroles, C. A., Mari-Solano, M., Aquadro, C. F., Pascual, M., Mestres, F., & , (2016). Inversions and adaptation to the plant toxin ouabain shape DNA sequence variation within and between chromosomal inversions of Drosophila subobscura. Scientific Reports. 6:23754.
Choi, J. Y., & Aquadro, C. F. (2016). Recent and long term selection across synonymous sites in Drosophila ananassae. Journal of Molecular Evolution. Early-Online:1-11.
Bui, D. T., Dine, E., Anderson, J. B., Aquadro, C. F., & Alani, E. (2015). A genetic incompatibility accelerates adaptation in yeast. PLOS Genetics. 11:e1005407.
Choi, J. Y., & Aquadro, C. F. (2015). Molecular evolution of Drosophila germline stem cell and neural stem cell regulating genes. GBE: Genome Biology and Evolution. 7:3097-3114.
Choi, J. Y., Bubnell, J. E., & Aquadro, C. F. (2015). Population genomic analysis of the infectious and integrated Wolbachia pipientis genomes in Drosophila ananassae. GBE: Genome Biology and Evolution. 7:236-282.
Flores, H. A., Bubnell, J. E., Aquadro, C. F., & Barbash, D. A. (2015). The Drosophila bag of marbles gene interacts genetically with Wolbachia and shows female-specific effects of divergence. PLOS Genetics. 11:e1005453.
Flores, H. A., Bauer DuMont, V. L., Fatoo, A., Hubbard, D., Hijji, M., Barbash, D. A., & Aquadro, C. F. (2015). Adaptive evolution of genes involved in the regulation of germline stem cells in Drosophila melanogaster and D. simulans. G3: Genes, Genomes, Genetics. 5:583-592.
Zaborske, J. M., Bauer DuMont, V. L., Wallace, E. W., Pan, T., Aquadro, C. F., & Drummond, D. A. (2014). A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus. PLOS Biology. 12:e1002015 (13 pages).
Choi, J. Y., & Aquadro, C. F. (2014). The coevolutionary period of Wolbachia pipientis infecting Drosophila ananassae and its impact on the evolution of the host germline stem cell regulating genes. MBE: Molecular Biology and Evolution. 31:2457 - 2471.
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